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Index >> Bacteriophages - Part One >> RF Replication ( RF to RF )

RF Replication ( RF to RF )


RF Replication ( RF to RF )
- The parental RF molecule now replicates to produce 100-200 copies of progeny RF molecules. RFI cannot give rise to viral strands directly. It is nicked by the product of gene II.

This enzyme recognizes a specific sequence of nucleotides in the intergenic space where the origin of replication is situated.

It thus functions as a site specific endonuclease.It may also have a role as an activator of a host enzyme and in the modification of the 5-terminus to prevent closure by the host ligase.


The nicked circular structure formed is called RFII. It replicates by the rolling circle mechanism, as described for tpX174. A new viral (+) strand is rolled off, using the circular complementary (-) strand as the template, and the original (to viral strand is released).


The released strand may either be converted into another replicative form, or may be incorporated into a new phage particle. If a complementary strand is synthesized, a replicative form results. For single strand production there is no complementary strand synthesis.

The replicative form is not formed in the absence of gene Y, protein. Defective gene V mutants can carry out RF replication, but do not enter into single strand synthesis. There is accumulation of a large pool of RF molecules, but no progeny single strands are formed.


A complementary (-) strand is synthesized on the displaced (+) strand. The double stranded structure formed undergoes circularization and is converted into the replicative form. A Cairns type replicative intermediate has also been visualized in Ff RF preparations. Thus replication via a unidirectional growing point cannot be ruled out.


Five bacterial genes are involved in Ff RF replication (rep, dnaB, dnaG, dnaE and RNA polymerase genes). The dnaB gene product appears to control semiconservative duplication, but not the synthesis of progeny ssDNA.

The dnaG product is a rifampicin resistant RNA polymerase, which appears to be required for RF à RF replication. The dnaE gene specifies DNA polymerase III, which polymerizes deoxynucleotides during RF duplication.

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