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Index >> Cellular Components >> Protein Structure

Protein Structure

Protein Structure - Protein molecules, especially those that fuction as catalysts, exist in a number of shapes. In a completely unfolded states, proteins consist of long chains of amino acid residues linked to each other through covalent peptide bonds . Also, the backbone of the polypeptide in relatively rigid and this rigidity arises from the peptidyl bonds.

Peptides are characterized both by their amino acid composition as well as the sequence of amino acids. The latter is more precise, as we shall see later. A large number of techniques are today available to determine both the amino acid composition and sequence of amino acids in the peptides. Hydrogen bonding occurs between both amide hydrogens and carboxyl oxygens even when they are peptide bonded.

In addition to this, the carboxyl oxygen of one peptide group can hydrogen bond to an amide hydrogen of a different peptide group, Depending upon the location of the amides which participate in hydrogen bonding, the pattern of symme­try of the peptide chain assumes a helical structure.

The structure and symmetry created by the various forces is caned the secondary structure of the polypeptide. Linneaus Pauling and Robert Corey in 1950 first proposed the a helical secondary structure of Polypeptides. In theory, the helix shows a screw type symmetry in either right handed or a left handed direction, which varies with different proteins. The number of amino acid residues per turn of the helix is 3.6

Basically, the amino acid sequence determines the secondary structure of peptides. These structures (primary and secondary) in addition to the various atomic attraction forces, determine the tertiary structure of peptides. It is now known that most catalytic proteins have a globular tertiary structure.

The most important contribution made towards understanding of the protein tertiary structure came from the study of crystalline proteins by X-ray diffraction technique. This technique has enabled us to understand as how polypeptides fold to give a globular structure. The linear sequence of amino acid residues contain all the necessary information for directing the folding process. Because of this, many proteins spontaneously and reversibly fold into these biologically active conformations which are maintained by intramolecular, noncova1ent forces and disulphide bridges. The single polypeptide chain is called a "monomer and proteins with two or more monomers are called multimers.

The multimers may be homo or hetero multimers. The structure of a protein Composed of two or more monomeric subunits is called the quaternary structure. In its simplest form, quaternary structure is the shape of the multimeric molecules and the shape of the multimer depends on tree number of monomers, the size and shape of each monomer, and on the nature of the monomer-monomer inter action. The quarternary structure of most multimers can be destroyed without disturbing the tertiary, secondary or primary structures. The dissociation is often reversible. The aggregation process (also called assembly) is directed by the tertiary structure of the monomers and does not need any catalytic function. Such self-assembly processes are wide spread in biological system. Most biologically active proteins are today known to be aggregates with tertiary structures In summary, the primary structure of the peptide is determined by the sequence of amino acids. This contributes to the second­ary structure and both contribute to the tertiary structure of the pro­tein. For each functional protein, these structures are defined and any alteration in this may lead to non function.

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