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DNA Base Composition

DNA Base Composition - Although DNA base composition may be determined chemically (hydrolysing DNA sample and separating the free bases) it can be determined more easily by physical methods that are now mostly used.

The melting temperature or buoyant density of DNA (i.e. the temperature at which it becomes denatured, by breakage of the hydrogen bonds holding the two strands together) is directly related to G+C content. Strand separation is accompanied by marked increase in absorbance at 260 nm, . the absorption maximum of DNA. When a DNA sample is gradually heated, the absorbance increases as the hydrogen bonds are broken and reaches a plateau at a temperature at which the DNA has all become single stranded

The midpoint of this rise, the melting temperature (Tm) is a measure of the G+C content. The G+C content may also be determined by subjecting a DNA sample to centrifugation in a CsCl gradient, which affords a precise measure of its density.. This method can be used because the density of DNA is also a function of the (G+C): (A+ T) ratio.

The mean DNA base composition characteristics of the nuclear DNA in major groups of organisms has been studied. In both plants and animals the ranges are relatively narrow and quite similar, centering about a value of 35 to 40 mole per cent G+C. Among the protists, the ranges are much wider, the widest range occurring among the prokaryotes, in which the range extends from about 30 to 75 mole per cent G+C.

It may be seen that the values vary remarkably among bacteria, from about 30 to 70 mole per cent G+C.

Various streptococci, pneumococci and lactobacilli have a similar value (38 to 40) which have been traditionally grouped together as lactic acid bacteria, because of their characteristic fermentation.

On the other hand, Lactobacillus bifadus, very much different with 56 per cent G+C, is now renamed Bifidobacterium.Within other large groups also, considerable range may be seen which have been grouped into a single genus, mainly on morphological grounds.

For example, range in different species of Proteus, Bacillus and Corynebacterium. If one examines the mean G+C content of many different strains of a single microbial species the values are closely similar or identical as shown for several species of Pseudomonas.

Each bacterial species accordingly has DNA with a characteristic mean G+C content which can be considered one of its important specific characters.

It has been observed in this approach that a substantial divergence between two organisms with respect to mean DNA base composition reflects a large number of individual differences between the specific base sequences of their respective DNAs. It is very important as the major genetic divergence reflects a wide evolutionary separation.

However this may not be true. Since two organisms with similar mean DNA base composition may differ greatly in genetic constitution. This is true for plants and animals. However this technique proved useful for microbes.

 

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