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Index >> Mycorrhizae >> Isolation of AM Fungal Spores

Isolation of AM Fungal Spores

Isolation of AM Fungal Spores
Soil samples with rootlets, preferably close to the root system are collected from a depth of 10-15cm after the surface soil has been scraped and dis­carded. Such samples from several locations within a plot or a given area are pooled and subjected to wet sieving and decanting procedure as fol­lows: The composite soil sample (say 50g) is placed in a beaker and mixed with water by frequent stirring. The suspension is passed through a 710 J.1m sieve placed in a funnel and the filtrate collected in a 1 litre measuring cylinder, taking care to wash the root-soil debris in fine jets of water until the filtrate reaches the high mark.

The residue containing the rootlets in the sieve is set aside. The filtrate in the cylinder is stirred constantly and allowed to pass through a 250 μm sieve and the filtrate collected in a second 1 litre measuring cylinder until the filtrate reaches the high mark. The residue in the sieve is set aside. This procedure is 'again repeated twice, once with 105 μm sieve and the other with a 53 μm mesh sieve and the filtrates collected in separate 1 litre measuring cylinders. The objective of stirring, sieving and washing so many times is to facilitate quantitative

AM Fungi on Roots
A. Spores, External Mycelium attached to roots B. Clumps of External Mycelium

Spores and External Mycelium attached to roots

Part of root with clumps of external mycelium

C. Arbuscles Showing Branched Form
D. Vesicles with Oil Globules

Arbuscles showing branched form

Arbuscles showing granular appearance and vesicles with oil globules

retrieval of spores depending on their size. Large circular sieves can also be used over glass troughs instead of small sieves in a funnel and the filtrates collected in a serial fashion.

The root pieces and residue from 710 and 250 μm sieves are examined under a dissecting microscope for hypae, spores and sporocarps and stained for light microscopic observations. The residues from 105 and 53 sieving must generally show up all the spores of smaller size when examined under a light microscope. The sieving method was originally used in nematode studies and later adopted for studying AM fungal spores and propagules. The method works fairly well in sandy soils but may pose problems with organic matter-rich soils

The finer roots are washed gently in tap water and simmered in 10 percent KOH at 90°C for 1-2 hours, rinsed in tap water, immersed in 2 per cent HCI and stained with 0.05 per cent trypan blue in lactophenol. This is done by boiling roots in the stain for 3 minutes, draining the excess stain and immersing the stained roots in lactophenol overnight to destain the cortical cells. Later the stained specimens may be examined under a microscope in lactic acid-glycerol medium (1:1) when only the hyphal strands and spores retain the stain. Due to the corrosive nature of the materials used in these studies, the procedures of staining and destaining are done in a fumehood.

To avoid the toxicity of compounds, a modified procedure has been suggested as follows: (1) heat roots in 2.5% KOH for 3 minutes at 121°C or 10-30 minutes at 90°C; (2) rinse roots in water; (3) if necessary, bleach roots in alkaline H2O2 for 10-30 minutes followed by rinsing with water; (4) soak roots in 20-50 vol. 1% HCl for 1-24 hrs; (5) stain roots in acidic glycerol/trypan blue for 3 minutes at 121°C or 10-30 minutes at 90°C and (6) destain in acidic glycerol and store roots in the same medium for exa­mination under microscope. The clearing, staining and destaining proce­dures may be varied by each investigator as the person begins to understand the nature of the specimen handled

The presence of oval, round or irregularly lobed vesicles occurring between or inside cortical cells, attached to hyphae and containing oil globule is a sign of AM fungal infection. These vesicles act as storage organs. The presence of branched arbuscules is another sign of AM fungal infection. These structures are intended to serve as two way channels for transport of nutrients, more particularly carbohydrates. Structures known as appressoria connect AM fungal ramifications inside roots with the mycelium of the fungus outside the root and serve as absorbing elements from soil to roots.

The morphology or resting spores form the basis for identification of isolates. Spores with straight or angular stalks are grouped together as genus Glomus whereas those with bulbous stalk come under the genus Gigaspora. Spore types without stalks (sessile) are grouped as genus.

Acaulospora. Spores that are arranged regularly on a central core in a sporocarp come under the genus Sclerocystis. The size of spores vary from 50 μm (Glomus microcarpus), 100-200 μm (Glomus mosseae), upto 400 μm (Gigaspora margarita) extending to nearly 1mm in few Gigaspora isolates. A specialist can only decide the actual identification of AM fungi to the level of species because the classification of species fungi is far from being clear.

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