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Index >> Virus Structure and Classification >> Circular Permutation of Some Bacteriophages

Circular Permutation of Some Bacteriophages

Circular Permutations of Some Bacteriophages -  The dsDNA of some bacteriophages, particularly the T-even phages (e. g. T4) shows both terminal redundancy and circular permutation. The replicating structure is:

a-b-c-d-,- - - - x-y-z-a-b-c-d

(Only one of the two strands has been shown), This is cut t random and gives rise to molecules of identical size but, with different terminal nucleotide sequences.

a-b-c-d- - - - - - x-y-z-a-b

b-c-d- - - -1- - x-y-z-a-b-c

c-d- - - - - - x-y-z-a-b-c-d

All the molecules, however, contain the same nucleotides.

The mechanism of insertion and excision of lambda phage DNA into the E. coli chromosome is described here to show how circular permutation takes place.

As mentioned previously, the DNA of the lambda phage is linear and double stranded. Extending beyond the double stranded region on one side of each strand are single stranded cohesive regions. When the linear lambda DNA is injected into the bacterial cell, the cohesive ends are joined to form a circular chromosome.

The circular form has 'nicks' 12 nucleotides apart which are joined by polynucleotide ligase. The circular intermediate is opened at a different point and inserted at a particular point on the E.coli chromosome by the viral enzyme integrase to form a lysogenic chromosome. The gene order now becomes 3, 4, 1, 2, a cyclic permutation of the orginal gene order I, 2, 3, 4.

After several generations the chromosome may enter the lytic phase as a result of induction by radiation or chemical compounds. The enzymes integrase and excisionase catalyse the excision of the lambda DNA from the E. coli chromosome.

The lambda DNA is converted back into the circular form, and the original gene order is restored.The, circular viral DNA replicates by the rolling circle method, producing several copies.

A specific viral enzyme cleaves the circular DNA giving rise to the linear form with cohesive ends.

 

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